DatasetSet_02_ATM_minus_versus_ATM_plus.phenotype_ATM_minus_versus_ATM_plus.cls
#ATM_minus_versus_ATM_plus.phenotype_ATM_minus_versus_ATM_plus.cls
#ATM_minus_versus_ATM_plus_repos
Phenotypephenotype_ATM_minus_versus_ATM_plus.cls#ATM_minus_versus_ATM_plus_repos
Upregulated in classATM_plus
GeneSetNCI_TNF RECEPTOR SIGNALING PATHWAY
Enrichment Score (ES)-0.474307
Normalized Enrichment Score (NES)-1.9274201
Nominal p-value0.0
FDR q-value0.014032065
FWER p-Value0.111
Table: GSEA Results Summary



Fig 1: Enrichment plot: NCI_TNF RECEPTOR SIGNALING PATHWAY   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

PROBEDESCRIPTION
(from dataset)
GENE SYMBOLGENE_TITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1CYCS1422484_at 1445484_at576.9500.0113No
2CEBPB1418901_at 1427844_a_at866.3740.0229No
3MYC1424942_a_at1655.4950.0303No
4PARP11422502_at 1422503_s_at 1435368_a_at 1443573_at2025.2470.0392No
5ASAH11416735_at2694.9030.0460No
6BAX1416837_at4194.2770.0477No
7BLK1422775_at4944.0320.0524No
8ATF11417296_at7223.5190.0490No
9FBXW111425461_at 1425462_at 1437468_x_at 1438336_at 1443010_at 1447294_at 1457485_at7303.4990.0557No
10CDK41422441_x_at7733.4310.0607No
11LCK1425396_a_at 1439145_at 1439146_s_at 1457917_at8193.3380.0653No
12KPNB11416925_at 1434357_a_at 1448526_at 1451967_x_at9043.1850.0678No
13CHUK1417091_at 1428210_s_at 1451383_a_at12142.8040.0592No
14PRKRA1447737_at 1448923_at13352.6930.0591No
15FGR1419526_at 1442804_at15022.5140.0565No
16LMNB21451849_a_at17552.3150.0495No
17PPARG1420715_a_at17582.3130.0541No
18YWHAG1420816_at 1420817_at 1450012_x_at 1459693_x_at20162.1460.0466No
19RFFL1431748_a_at 1434432_at20492.1300.0494No
20IL2RA1420691_at 1420692_at20562.1260.0534No
21MAP3K71419988_at 1425795_a_at 1426627_at 1449693_at 1455441_at 1458787_at21652.0660.0525No
22LRDD1421397_a_at23421.9760.0484No
23RPS6KA51431050_at 1437625_at 1439004_at 1440343_at26211.8540.0393No
24HSPB11422943_a_at 1425964_x_at 1427853_a_at 1427854_x_at 1453914_at28831.7590.0308No
25XPO11418442_at 1418443_at 1448070_at29751.7250.0301No
26DIABLO1417683_at 1425768_at30461.7000.0303No
27NRK1436399_s_at 1450078_at 1450079_at31381.6680.0294No
28PRKCI1417410_s_at 1448695_at33441.6090.0232No
29EIF4EBP11417562_at 1417563_at 1434976_x_at33511.6070.0262No
30MAP3K121417115_at 1438908_at 1456565_s_at34621.5740.0242No
31UBE2D31423112_at 1423113_a_at 1423114_at 1450858_a_at 1450859_s_at 1455479_a_at 1455480_s_at36071.5270.0207No
32CASP81424552_at37091.5000.0190No
33ELK41422233_at 1427162_a_at 1447571_at 1450549_s_at38031.4750.0177No
34PPARGC1A1434099_at 1434100_x_at 1437751_at 1456395_at 1460336_at39431.4360.0142No
35IKBKB1426207_at 1426333_a_at 1432275_at 1445141_at 1454184_a_at39621.4300.0162No
36DUSP81418714_at40041.4200.0172No
37PAWR1444808_at 1445390_at41461.3820.0135No
38MAPKAPK21426648_at41751.3780.0149No
39LMNB11423520_at 1423521_at42771.3580.0130No
40SMPD31422779_at 1438665_at 1445759_at 1450748_at43551.3380.0122No
41HCK1446553_at 1449455_at43771.3340.0139No
42MAP3K7IP11426898_at 1447692_x_at44111.3230.0150No
43IL31450566_at45281.2940.0123No
44SLC3A21425364_a_at48671.225-0.0009No
45AKT11416657_at 1425711_a_at 1440950_at 1442759_at50611.188-0.0074No
46PRKCH1422079_at 1434248_at55731.094-0.0287No
47YES11418470_at 1449090_a_at 1456843_at 1458878_at56861.077-0.0317No
48MAP2K21415974_at 1443436_at 1460636_at59161.039-0.0402No
49RAC11423734_at 1437674_at 1451086_s_at59681.031-0.0405No
50RNF1281418318_at 1449036_at61121.009-0.0451No
51RAN1443131_at 1446819_at 1447478_at 1460551_at61511.002-0.0448No
52EGR41449977_at61571.002-0.0430No
53VIM1438118_x_at 1450641_at 1456292_a_at62690.987-0.0461No
54MEF2C1421027_a_at 1421028_a_at 1424852_at 1439946_at 1445420_at 1446484_at 1451506_at 1451507_at 1458551_at62790.985-0.0446No
55IL51425546_a_at 1442049_at 1450550_at63270.977-0.0448No
56EIF4E1450909_at 1457489_at 1459371_at66160.936-0.0562No
57IGF11419519_at 1436497_at 1437401_at 1452014_a_at66950.920-0.0579No
58BAD1416582_a_at 1416583_at67590.912-0.0590No
59IFNG1425947_at68150.904-0.0597No
60CALM11417365_a_at 1417366_s_at 1433592_at 1454611_a_at 1455571_x_at68260.902-0.0584No
61TH1420546_at70320.869-0.0661No
62YWHAB1420878_a_at 1420879_a_at 1420880_a_at 1436783_x_at 1438708_x_at 1455815_a_at71040.858-0.0676No
63CALM21422414_a_at 1423807_a_at72910.826-0.0745No
64ESR11421244_at 1435663_at 1457877_at 1460591_at73060.825-0.0735No
65POU2F11419716_a_at 1427695_a_at 1427835_at73320.821-0.0730No
66TP531426538_a_at 1427739_a_at 1438808_at 1457623_x_at 1459780_at 1459781_x_at74990.796-0.0791No
67AKAP51447301_at81580.700-0.1080No
68TCF31436207_at 1450117_at81650.700-0.1069No
69SFN1448612_at82060.692-0.1073No
70NFATC21425901_at 1425990_a_at 1426031_a_at 1426032_at 1439205_at 1440426_at83220.675-0.1113No
71ETV11422607_at 1445314_at 1450684_at85900.635-0.1223No
72NUP2141434351_at 1456503_at 1457815_at85990.634-0.1214No
73CASP11449265_at86390.628-0.1220No
74CASP41449591_at92930.532-0.1510No
75SRF1418255_s_at 1418256_at95170.501-0.1603No
76TNF1419607_at95330.499-0.1600No
77YWHAZ1416102_at 1416103_at 1436971_x_at 1436981_a_at 1439005_x_at 1443893_at 1448218_s_at 1448219_a_at97540.468-0.1692No
78CAV11449145_a_at98970.448-0.1748No
79LIMK11417627_a_at 1425836_a_at 1456234_at 1458989_at99670.439-0.1771No
80PIM11423006_at 1435458_at99850.437-0.1770No
81GSN1415812_at 1436991_x_at 1437171_x_at 1441225_at 1456312_x_at 1456568_at 1456569_x_at100360.430-0.1785No
82DUSP101417163_at 1417164_at100910.424-0.1801No
83PLA2G4A1448558_a_at101680.415-0.1828No
84EGF1418093_a_at102990.397-0.1880No
85NFKBIA1420088_at 1420089_at 1438157_s_at 1448306_at 1449731_s_at104430.375-0.1938No
86CASP31426165_a_at 1430192_at 1449839_at104810.370-0.1948No
87PTPRK1423277_at 1423278_at 1431680_a_at 1441276_at 1441277_s_at 1441644_at 1443491_at 1443699_at 1444763_at105450.361-0.1969No
88CALM31426710_at 1438825_at 1438826_x_at 1450864_at106490.345-0.2010No
89GDI11447613_at 1451070_at109130.312-0.2125No
90RIPK21421236_at 1450173_at110960.286-0.2203No
91MEF2D1421388_at 1434487_at 1436642_x_at 1437300_at 1458901_at112140.268-0.2252No
92ERC11421501_a_at 1424247_at 1441493_at 1444356_at 1451279_at112230.267-0.2250No
93PRKCA1427562_a_at 1443069_at 1445028_at 1445395_at 1446598_at 1450945_at115730.217-0.2407No
94ATM1421205_at 1428830_at117270.193-0.2473No
95CREBBP1434633_at 1435224_at 1436983_at 1444856_at 1457641_at 1459804_at118170.179-0.2511No
96PRKG11443663_at 1443811_at 1443812_x_at 1444232_at 1445807_at 1445998_at 1449876_at118330.177-0.2514No
97NFKB11427705_a_at 1442949_at118480.175-0.2517No
98YWHAE1426384_a_at 1426385_x_at 1435702_s_at 1438839_a_at 1440841_at 1457173_at119620.157-0.2566No
99MAP4K51427083_a_at 1427084_a_at 1427376_a_at 1440059_at 1445426_at 1446348_at 1447204_at120160.149-0.2587No
100PIK3CA1423144_at 1429434_at 1429435_x_at 1440054_at 1453134_at 1460326_at122170.117-0.2677No
101LMNA1421654_a_at 1425472_a_at 1426868_x_at 1452212_at 1457670_s_at123780.094-0.2749No
102PDGFA1418711_at 1449187_at124050.091-0.2759No
103MAP2K31425456_a_at 1451714_a_at124190.089-0.2764No
104PAK31417923_at 1417924_at 1437318_at125410.071-0.2818No
105IRF41421173_at 1421174_at127620.038-0.2919No
106APP1420621_a_at 1427442_a_at 1438373_at 1438374_x_at 1444705_at 1447347_at 1458525_at127720.037-0.2922No
107MAF1435828_at 1437473_at 1444073_at 1447849_s_at 1447945_at 1456060_at127770.036-0.2923No
108MAP4K31444406_at127840.035-0.2925No
109NSMAF1416412_at13138-0.027-0.3087No
110HBP11432143_a_at 1438430_at 1446269_at 1460367_at13231-0.042-0.3129No
111MITF1422025_at 1455214_at13369-0.065-0.3191No
112ITCH1415769_at 1431316_at 1459332_at13584-0.100-0.3287No
113FOSL11417487_at 1417488_at13667-0.117-0.3323No
114IL41449864_at13829-0.148-0.3394No
115MAPK141416703_at 1416704_at 1426104_at 1442364_at 1451927_a_at 1459617_at13846-0.151-0.3399No
116NUMA11423974_at 1423975_s_at 1441090_at 1444576_at 1444577_x_at13859-0.153-0.3401No
117USF11426164_a_at 1448805_at 1459758_at13864-0.154-0.3400No
118CSNK1A11424827_a_at 1428537_at 1430529_at 1451497_at 1456216_at13868-0.154-0.3398No
119SMPD11447874_x_at 1448621_a_at13941-0.167-0.3428No
120SYK1418261_at 1418262_at 1425797_a_at 1457239_at13945-0.167-0.3426No
121DUSP161418401_a_at 1440615_at 1440651_at14186-0.210-0.3532No
122PTGS21417262_at 1417263_at14273-0.228-0.3567No
123RALA1423137_at 1450870_at 1456049_at14310-0.235-0.3579No
124CD40LG1422283_at14368-0.246-0.3601No
125BID1417045_at 1447873_x_at 1448560_at14384-0.248-0.3603No
126CRADD1427505_a_at 1443430_at14523-0.274-0.3661No
127FASLG1418803_a_at 1449235_at14646-0.298-0.3711No
128BCL101418970_a_at 1418971_x_at 1418972_at 1443524_x_at14734-0.314-0.3745No
129TNFAIP31433699_at 1450829_at14751-0.319-0.3746No
130GNB2L11440120_at 1455168_a_at15037-0.375-0.3870No
131MAPKAPK51417016_at 1439828_at15041-0.376-0.3863No
132FYN1417558_at 1441647_at 1448765_at15050-0.377-0.3860No
133CFL21418066_at 1418067_at 1431432_at15248-0.416-0.3942No
134GATA31448886_at15328-0.436-0.3970No
135E2F11417878_at 1431875_a_at 1447840_x_at15380-0.452-0.3984No
136BCL21422938_at 1427818_at 1437122_at 1440770_at 1443837_x_at 1457687_at15444-0.468-0.4004No
137ATF21426582_at 1426583_at 1427559_a_at 1437777_at 1452116_s_at 1459237_at15469-0.472-0.4005No
138GZMB1419060_at15478-0.475-0.4000No
139TNIK1443802_at15786-0.551-0.4130No
140TRAF61421376_at 1421377_at 1435350_at 1443288_at 1446940_at 1446977_at15940-0.585-0.4189No
141EGR31421486_at 1436329_at15964-0.593-0.4187No
142PRKCZ1418085_at 1449692_at 1454902_at16125-0.637-0.4248No
143TOP11423474_at 1438495_at 1457573_at 1459672_at16190-0.655-0.4265No
144PTPN11417068_a_at 1438670_at16225-0.665-0.4267No
145MAPK91421876_at 1421877_at 1421878_at16335-0.696-0.4303No
146MAP2K11416351_at16403-0.715-0.4320No
147REL1420710_at16407-0.716-0.4307No
148MAPK81420931_at 1420932_at 1437045_at 1440856_at 1457936_at16570-0.764-0.4366No
149PIK3R11425514_at 1425515_at 1438682_at 1444591_at 1451737_at16790-0.838-0.4450No
150CREB11421582_a_at 1421583_at 1423402_at 1428755_at 1452529_a_at 1452901_at16793-0.840-0.4434No
151TRADD1429117_at 1439910_a_at 1452622_a_at16801-0.841-0.4421No
152JUN1417409_at 1448694_at16926-0.879-0.4460No
153PRKCD1422847_a_at 1442256_at16936-0.882-0.4447No
154PRKACA1447720_x_at 1450519_a_at16985-0.895-0.4451No
155SRC1423240_at 1450918_s_at16997-0.899-0.4438No
156RIPK11419508_at 1439273_at 1449485_at17018-0.908-0.4429No
157GAS21429147_at 1435834_at 1438564_at 1450112_a_at17098-0.936-0.4446No
158CSF21427429_at17131-0.946-0.4442No
159FKBP1A1416036_at 1438795_x_at 1438958_x_at 1448184_at 1456196_x_at17302-1.000-0.4500No
160MEF2A1421252_a_at 1425426_a_at 1427185_at 1427186_a_at 1452347_at17332-1.008-0.4494No
161PTK21423059_at 1430827_a_at 1439198_at 1440082_at 1441475_at 1443384_at 1445137_at17364-1.019-0.4487No
162MALT11445068_at 1456126_at 1456429_at17437-1.041-0.4500No
163MAP3K81419208_at17444-1.043-0.4481No
164CYLD1429617_at 1429618_at 1445213_at17466-1.050-0.4470No
165BIRC31421392_a_at 1425223_at17639-1.121-0.4527No
166CASP91426125_a_at 1437537_at 1457816_at17786-1.190-0.4570No
167PRKCE1437860_at 1437861_s_at 1442609_at 1444649_at 1449956_at 1452878_at17869-1.223-0.4583No
168GSK3B1434439_at 1437001_at 1439931_at 1439949_at 1451020_at 1454958_at17937-1.251-0.4589No
169PAK11420979_at 1420980_at 1450070_s_at 1459029_at18052-1.297-0.4616No
170PAK21434250_at 1454887_at18107-1.315-0.4614No
171MKNK11417630_at 1417631_at 1454119_at18221-1.375-0.4639No
172TBX211449361_at18264-1.395-0.4630No
173MAPKAPK31434815_a_at 1437494_at18376-1.449-0.4652No
174SQSTM11440076_at 1442237_at 1444021_at 1450957_a_at18467-1.501-0.4663No
175BAG41418707_at 1439024_at 1449186_at18489-1.510-0.4643No
176ATF61435444_at 1453288_at 1456021_at18505-1.521-0.4619No
177MAPK111421925_at 1421926_at18775-1.658-0.4710Yes
178CBLB1437304_at 1455082_at 1458469_at18835-1.687-0.4703Yes
179CTLA41419334_at18865-1.700-0.4682Yes
180FADD1416888_at 1446499_at18889-1.709-0.4659Yes
181CAMK41421941_at 1426167_a_at 1439843_at 1442822_at 1452572_at18892-1.712-0.4625Yes
182MAPK11419568_at 1426585_s_at 1442876_at 1453104_at18978-1.781-0.4628Yes
183KSR11419823_s_at 1442581_at 1450114_at19051-1.829-0.4625Yes
184SMPD21416999_at19133-1.889-0.4624Yes
185MAP3K7IP21423462_at 1451003_at19161-1.912-0.4598Yes
186FKBP81416113_at19185-1.925-0.4570Yes
187CSNK2A11419034_at 1419035_s_at 1419036_at 1419037_at 1419038_a_at 1453427_at19300-2.009-0.4582Yes
188TNFRSF1B1418099_at 1448951_at19320-2.022-0.4550Yes
189CASP21448165_at19399-2.069-0.4545Yes
190RALB1417744_a_at 1435517_x_at19408-2.076-0.4507Yes
191RAB5A1416426_at 1446129_at19417-2.083-0.4469Yes
192SLC9A11417397_at19472-2.112-0.4451Yes
193DDIT31417516_at 1443897_at19630-2.223-0.4479Yes
194ARRB21426239_s_at 1451987_at19731-2.311-0.4478Yes
195CDC25B1421963_a_at19733-2.313-0.4432Yes
196RPS6KA41438243_at 1448498_at19778-2.357-0.4405Yes
197DFFB1421229_at 1437051_at19782-2.361-0.4359Yes
198YWHAH1416004_at19886-2.460-0.4357Yes
199MAP3K141422999_at 1434364_at20053-2.632-0.4381Yes
200ACTA11427735_a_at20245-2.852-0.4412Yes
201TSC21452105_a_at20291-2.895-0.4374Yes
202NFKB21425902_a_at 1429128_x_at20307-2.917-0.4323Yes
203SPHK21417431_a_at 1426230_at20331-2.953-0.4274Yes
204MAP2K41426233_at 1442679_at 1451982_at20425-3.061-0.4255Yes
205IKBKG1421208_at 1421209_s_at 1435646_at 1435647_at 1450161_at 1454690_at20492-3.141-0.4223Yes
206FOXP31420765_a_at 1457082_at20497-3.148-0.4161Yes
207EP3001434765_at20519-3.188-0.4107Yes
208APAF11450223_at20613-3.326-0.4083Yes
209BCL31418133_at20646-3.380-0.4030Yes
210MAPK31427060_at20670-3.407-0.3972Yes
211CTSD1448118_a_at20732-3.493-0.3930Yes
212PRKCQ1426044_a_at20749-3.522-0.3866Yes
213NFATC11417621_at 1425761_a_at 1428479_at 1447084_at 1447085_s_at20784-3.572-0.3810Yes
214BIRC21418854_at20809-3.626-0.3748Yes
215MAP4K21428297_at 1434833_at 1450244_a_at20871-3.716-0.3702Yes
216SREBF11426690_a_at20873-3.719-0.3628Yes
217STAT11420915_at 1440481_at 1450033_a_at 1450034_at20879-3.726-0.3555Yes
218MAP2K61426850_a_at 1459292_at20947-3.821-0.3509Yes
219RELA1419536_a_at20962-3.850-0.3438Yes
220SATB11416007_at 1416008_at 1439203_at 1439449_at 1443284_at 1456902_at20971-3.867-0.3364Yes
221MAP2K71421416_at 1425393_a_at 1425512_at 1425513_at 1440442_at 1451736_a_at 1457182_at20978-3.880-0.3289Yes
222PRF11451862_a_at21079-4.092-0.3253Yes
223TRAF21451233_at21088-4.116-0.3174Yes
224DGKA1418578_at21145-4.248-0.3114Yes
225FOS1423100_at21153-4.275-0.3032Yes
226YWHAQ1420828_s_at 1420829_a_at 1420830_x_at 1432842_s_at 1437608_x_at 1454378_at 1460590_s_at 1460621_x_at21162-4.288-0.2949Yes
227TRAF11423602_at 1445452_at21192-4.381-0.2874Yes
228RAF11416078_s_at 1425419_a_at21295-4.634-0.2828Yes
229ADAM171421857_at 1421858_at 1421859_at 1445500_at21310-4.679-0.2741Yes
230MAP3K31426686_s_at 1426687_at 1436522_at21412-5.003-0.2687Yes
231ARHGDIB1426454_at21447-5.166-0.2599Yes
232NFATC31419976_s_at 1452497_a_at21485-5.330-0.2508Yes
233MAP4K41422615_at 1440609_at 1448050_s_at 1459912_at21585-5.843-0.2437Yes
234JUNB1415899_at21600-5.913-0.2324Yes
235MAP3K11424850_at21629-6.080-0.2215Yes
236MADD1425735_at 1455502_at21632-6.088-0.2094Yes
237DUSP11448830_at21725-6.946-0.1996Yes
238RELB1417856_at21755-7.349-0.1862Yes
239NR4A11416505_at21771-7.733-0.1714Yes
240TNFRSF1A1417291_at21853-9.228-0.1566Yes
241EGR11417065_at21855-9.280-0.1380Yes
242CASP71426062_a_at 1448659_at21890-11.018-0.1174Yes
243LSP11417756_a_at21894-11.171-0.0951Yes
244CCM21434648_a_at 1434649_at 1456290_x_at 1457339_at21896-11.411-0.0722Yes
245DFFA1450885_at 1457564_at21920-12.111-0.0489Yes
246CASP61415995_at 1458715_at21923-12.179-0.0245Yes
247EGR21427682_a_at 1427683_at21928-12.4310.0003Yes
Table: GSEA details [plain text format]



Fig 2: NCI_TNF RECEPTOR SIGNALING PATHWAY   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: NCI_TNF RECEPTOR SIGNALING PATHWAY: Random ES distribution   
Gene set null distribution of ES for NCI_TNF RECEPTOR SIGNALING PATHWAY